FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947956

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947956
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4340198
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGCTGT427663598.53548156097948No Hit
CTAGCTGA215150.4957147116329716No Hit
CTAGCTAT68930.15881763919526254RNA PCR Primer, Index 38 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)