FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947965

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947965
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4400585
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGCGA423799896.3053321319779No Hit
TCCTGCGA443231.0072069963425319No Hit
TCATGCGC171400.38949366959165654No Hit
TCATGCAA117810.26771440615281833No Hit
TCAAGCGA104590.2376729457560756No Hit
TCATCCGA85770.19490590455587153No Hit
ACATGCGA83170.1889975991828359No Hit
TCATGCCA81660.1855662372161883No Hit
TCATGAGA75690.1719998591096411No Hit
TAATGCGA69270.15741088968853004No Hit
TCATGCGT47870.10878099161815986No Hit
TCATGCTA44910.10205461319347314No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)