FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947966

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947966
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4217954
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTCGAG413439498.01894473007529No Hit
CGCTCGAG92950.2203675051932762No Hit
AGCACGAG69960.16586240627564927No Hit
AGCTCGAA68030.16128672811510036No Hit
AGCTCGCG60310.14298401547290462No Hit
AGCTCCAG53450.12672020605250792No Hit
AGCTCGAC50500.11972629383819738No Hit
AGATCGAG42310.10030929687711151No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)