FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14290589
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAATGT1405080698.32209155269948No Hit
GGTAATGA590000.4128591200824543No Hit
GGTAAAGT255150.1785440754051495No Hit
GGAAATGT214750.15027372209780857No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)