FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3189087
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGAGC311913597.80651954618986No Hit
GGTCGCGC226520.7102973358832795No Hit
GGTCGAGA73300.22984634787323144No Hit
GGACGAGC44540.139663797193366No Hit
GGTAGAGC37680.11815293844288349No Hit
GGTCGACC37500.11758851357771048No Hit
GGTCCAGC32090.10062441068556612No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)