FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947983

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947983
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9137072
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCATC890966197.51111734700132No Hit
CAACCATA409340.44799909642826496No Hit
AAACCATC359980.39397741420884064No Hit
CCACCATC289260.316578440007915No Hit
CAACCAAC280820.3073413452361982No Hit
CAAACATC155290.1699559771445382No Hit
CAACAATC145860.15963538428940913RNA PCR Primer, Index 36 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)