FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4203316
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATCCTT402418395.73829329034506No Hit
TCCTCCTT475491.131225917822976No Hit
TCATCCTA392730.9343337498298961No Hit
TCATACTT123580.2940059705242242No Hit
TAATCCTT109650.26086546907251323No Hit
TCAACCTT102270.2433079026178379No Hit
ACATCCTT97310.2315076953529071No Hit
TCATCATT93800.22315714545373228No Hit
TCATCCAT92150.21923167327890647No Hit
TCATCCGT47500.11300601715407549No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)