FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3277531
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCACCT315063396.12824409593685No Hit
GCGCCCCT387821.183268747114825No Hit
GCGCACCA242470.7397946808130876No Hit
GCGCACAT71170.21714516201372316No Hit
CCGCACCT62800.19160764612142495No Hit
GCGCACCG59600.1818441991853014No Hit
GCCCACCT54860.16738209341116836No Hit
GCGCAACT45920.14010546353337314No Hit
GCGAACCT45090.1375730694843161No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)