FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947991

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947991
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3549676
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAACAA347878098.00274729299238No Hit
GCCAAAAA100370.2827582010301785No Hit
CCCAACAA72860.20525817004143476RNA PCR Primer, Index 36 (100% over 8bp)
GCCCACAA53100.14959111761186092No Hit
GACAACAA52520.14795716566807787No Hit
GCAAACAA45590.12843425709839432No Hit
GCCACCAA43210.12172941981183635No Hit
GCCAACCA40730.11474286667290197No Hit
ACCAACAA39290.11068615839868202No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)