FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3368404
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG327097397.10750254423162No Hit
CTATTTGA238780.7088817137136757No Hit
CGATTTGG63630.18890251881900152No Hit
CTAATTGG61530.1826681122573183No Hit
CTATATGG60350.1791649695226582No Hit
CTTTTTGG59970.17803683881149648No Hit
CTATTTTG59740.1773540228547407No Hit
CTATTTGC55550.16491489738166798No Hit
CAATTTGG54210.16093675224230822No Hit
CTATTTCG48010.14253040906019587No Hit
ATATTTGG44020.13068503659299777No Hit
CTATTAGG43760.1299131576853608No Hit
CTAGTTGG43010.12768658391333107No Hit
GTATTTGG38350.11385213887645305No Hit
CTATTTGT34520.10248176881395461No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)