FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947997

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947997
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3368404
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT96520.2865452006350782No Hit
TCGCGGTGAGTCTTGA91090.27042480652558304No Hit
GGGGGGGGGGGGGGGG82860.2459918703338436No Hit
GTTAAGAGAGTACGTT64540.19160409499573092No Hit
CGCTTACTGATCACAC58730.17435557017507403No Hit
TACCAGTGATACGATC54080.16055081278848973No Hit
ATCTTACTGGTTTGGT53360.1584133019673412No Hit
TTGTGGTGAAAGACAT53350.15838361431704748No Hit
ATAGATGGAGAGTAAT50890.15108045234479No Hit
ATTCCTAACTGCGTGC50660.15039763638803422No Hit
ATATGCCGAGAACAGC46500.13804757386584268No Hit
GCGGTTCGAAGCAAGC45230.13427724227853904No Hit
TGGAACACTTGAGGCA44170.1311303513474037No Hit
CTTGACGCTCAGGGTA43710.12976471943389215No Hit
AGGTAGCGATTGACCA42810.12709283090745646No Hit
GCTATACGACAGGTGA42210.1253115718898327No Hit
AGCTCTGCTGGCCTGT41820.12415375352837724No Hit
CTTTCTGCTCTTGTGA41000.12171936620429141No Hit
ACTGGAACTCTGGAAG38980.11572246084495803No Hit
ACGCTCTTGCCTCAAA38760.11506933253849598No Hit
TGTGACTGACCGTTAA37890.11248650696294149No Hit
AGTTCACGACCAGAGA36590.10862711242475664No Hit
TGTACCCTGCTGAGAG36320.10782554586682595No Hit
ACATGTGTGTCAATGC34860.10349114892394143No Hit
TTCCAAACTCCGCTAG34750.1031645847707104No Hit
ACCCTTTCTAGGTGAC34410.10215520466072359No Hit
TCCCAGACTCCTAACA34340.1019473911086675No Hit
GGGAGCTCTTGATGAA34030.10102707394956188No Hit
TCAGTCCACCCAGCAC33740.10016613209104372No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)