FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947998

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947998
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4203316
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA177150.4214529671335679No Hit
CATTCAACTAGGCATG155460.369850851089949No Hit
GTCGACCGATGCTCAA131810.31358574991744614No Hit
ACTGGGCACTTCTCGC124000.2950051816232708No Hit
TGTAAGCTGTTGTGAC119500.28429934841920046No Hit
GGGGGGGGGGGGGGGG117460.2794460373666886No Hit
GCTTTAGGAACTAGTC80910.19249088100918418No Hit
TAGTTGCGACATAGCT70290.16722511464757825No Hit
CATCAGTGATTCGCAA67210.15989756658790344No Hit
CAGGAGCCTCGTGCAC58670.13958027424062336No Hit
CAGGAGCCTTCCAATG50590.12035735595420378No Hit
TCCTTAAACAGGGAGG47790.11369594862722669No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)