FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948000

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948000
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3277531
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT85950.26224008254994385No Hit
GGGGGGGGGGGGGGGG80660.24609988433366456No Hit
TCGCGGTGAGTCTTGA73690.22483387647592043No Hit
GTTAAGAGAGTACGTT66270.2021948838927839No Hit
ATCTTACTGGTTTGGT56400.17208075224917782No Hit
TACCAGTGATACGATC55570.16954835820012076No Hit
CGCTTACTGATCACAC55200.1684194596481315No Hit
TTGTGGTGAAAGACAT53670.1637513115817974No Hit
ATAGATGGAGAGTAAT52020.15871703425535869No Hit
ATTCCTAACTGCGTGC51640.157557624931694No Hit
ATATGCCGAGAACAGC48190.14703140870368578No Hit
TGGAACACTTGAGGCA46510.14190559906222092No Hit
GCTATACGACAGGTGA44960.13717642945253605No Hit
CTTTCTGCTCTTGTGA44590.13604753090054678No Hit
CTTGACGCTCAGGGTA43300.13211164135442197No Hit
AGCTCTGCTGGCCTGT41630.1270163424846325No Hit
AGGTAGCGATTGACCA40840.12460599152227698No Hit
ACTGGAACTCTGGAAG40730.12427037303384773No Hit
TGTGACTGACCGTTAA38120.11630706162657195No Hit
AGTTCACGACCAGAGA37430.11420181838097032No Hit
TTCCAAACTCCGCTAG37380.11404926452259338No Hit
TGTACCCTGCTGAGAG36770.11218810745039483No Hit
GCGGTTCGAAGCAAGC36460.11124227352845785No Hit
ACATGTGTGTCAATGC36380.11099818735505476No Hit
ACCCTTTCTAGGTGAC35570.10852681484934848No Hit
TCCCAGACTCCTAACA34610.10559778076851141No Hit
TCAGTCCACCCAGCAC34460.10514011919338064No Hit
ACACTCCACCGTACAT34380.10489603301997753No Hit
CACAGCTCTCTCTGGG33820.1031874298061559No Hit
CAGTGGAGAGATCATC33680.1027602790027005No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)