FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948013

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948013
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3464663
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT97370.2810374342324203No Hit
TCGCGGTGAGTCTTGA96420.2782954648114405No Hit
GGGGGGGGGGGGGGGG89610.2586398734884172No Hit
GTTAAGAGAGTACGTT67240.19407370933334642No Hit
CGCTTACTGATCACAC60890.1757458084667975No Hit
TACCAGTGATACGATC55640.16059281956138302No Hit
ATCTTACTGGTTTGGT54840.15828379268055798No Hit
TTGTGGTGAAAGACAT54560.15747563327226918No Hit
ATAGATGGAGAGTAAT53830.15536864624351632No Hit
ATTCCTAACTGCGTGC50950.1470561494725461No Hit
ATATGCCGAGAACAGC49690.14341943213524663No Hit
GCGGTTCGAAGCAAGC46970.13556874074044142No Hit
CTTGACGCTCAGGGTA46530.13429877595598763No Hit
TGGAACACTTGAGGCA46380.13386583341583294No Hit
AGGTAGCGATTGACCA44900.12959413368630657No Hit
GCTATACGACAGGTGA43870.12662126157724432No Hit
CTTTCTGCTCTTGTGA43490.1255244738088524No Hit
AGCTCTGCTGGCCTGT43310.12500494276066676No Hit
ACTGGAACTCTGGAAG41120.11868398167440815No Hit
TGTGACTGACCGTTAA39890.11513385284513963No Hit
ACGCTCTTGCCTCAAA39320.11348867119255178No Hit
NNNNNNNNNNNNNNNN38990.11253619760421144No Hit
AGTTCACGACCAGAGA37930.10947673698711823No Hit
TGTACCCTGCTGAGAG37260.10754292697442724No Hit
ACCCTTTCTAGGTGAC36930.1065904533860869No Hit
ACACTCCACCGTACAT36560.10552252845370531No Hit
ACATGTGTGTCAATGC35730.10312691306484931No Hit
TTCCAAACTCCGCTAG35120.1013662800682202No Hit
GGGAGCTCTTGATGAA34810.10047153215190048No Hit
TCCCAGACTCCTAACA34770.10035608080785924No Hit
CACAGCTCTCTCTGGG34700.10015404095578705No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)