FastQCFastQC Report
Fri 9 Sep 2022
EGAF00004948014

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948014
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17311110
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG1699650498.18263531339123No Hit
TCTTTTAG384450.22208281271391608No Hit
TCTAATAG355450.20533056516884243No Hit
TCTATTAA353230.20404815173608162No Hit
ACTATTAG329430.1902997554749522No Hit
TCAATTAG309830.17897754678931624No Hit
TCTATAAG241680.13960976505839315No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)