FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004948015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30784714
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCATC3012317097.85106335566411No Hit
CAACCATA1420840.46154075038670167No Hit
CAACCAAC1137550.3695178067920332No Hit
AAACCATC560030.18191820784821974No Hit
CACCCATC555630.18048892706945402No Hit
CAACCCTC411350.1336215109875635No Hit
CAACAATC317610.10317133366904106RNA PCR Primer, Index 36 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)