FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences996732
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA53620.5379580468972602No Hit
CGACCAGACGCGCTGT48160.4831790290669909No Hit
GATGAATGACTCCTAC46370.46522034007135316No Hit
TAGCTTTACCCTATCC46270.46421706135651314No Hit
CCAGGACTGTAACTCG36050.36168197669985513No Hit
ATCTGTACTGGGACTA32740.3284734512386479No Hit
CTTCCTTTGGCTCAGC32210.3231560740499954No Hit
CGATCAAACCCGGCTA30170.3026891882672574No Hit
GTTCTCGACCGTAGAG28790.28884394200246405No Hit
GGGGGGGGGGGGGGGG27210.2729921383079905No Hit
AGACCATTGAATCCAC27080.2716878759786984No Hit
TGCTGCTACTTTCTTG25980.2606518101154573No Hit
ACAGCCGACTTGCGTA23680.23757639967413507No Hit
AACTTACCTCACCTAA21520.21590557943358896No Hit
CGCGTTGGAGCGGTTC21350.21420000561836078No Hit
ATCGAAAGATTTCCGC19990.2005554150965355No Hit
CCCTGAACTAGCTTTG19310.19373311983562283No Hit
AGTGGAGTGAGTTGAA18050.18109180802863759No Hit
GTAACTGTGTGAAAGT17910.17968721782786146No Hit
CAATTCGGATAACGGG17710.17768066039818126No Hit
AAGAACCCTTAACCCA16760.16814951260720035No Hit
TTCCTAAACTAATGCC16430.16483869284822802No Hit
GGGTAGAACCAGTCTA16430.16483869284822802No Hit
CGCGATCGATATCTGG16330.16383541413338792No Hit
TCCGGGAACGTTCTCC15960.16012328288847957No Hit
TTTAGTCTGAGCAATA15680.1573141024869273No Hit
TGCAGATACTGCCACG15660.15711344674395925No Hit
TGGAACACTCCTAGTA15480.1553075450572471No Hit
TGATAGAGAGACTGTT15080.1512944301978867No Hit
GTGAAGCGATCCCAGG14870.14918754489672248No Hit
CTTTAACTGTCCGTAA14700.14748197108149433No Hit
TGCAGTATGACACCGC14300.14346885622213393No Hit
AGTCCTGCTCGAACGA14230.14276656112174588No Hit
AGGTGTGGATCATGTG14100.14146229879245376No Hit
TCTCAGAGATGCATGT14090.14136197092096972No Hit
CTATTGGGACTTGTGA14070.1411613151780017No Hit
CACATCCTGAGCCTAT13820.13865311839090147No Hit
TCAAAGCACTCTGCAA13610.13654623308973726No Hit
CTTAGATCTTGTCACA13570.1361449216038012No Hit
CATAGGTACAAGGTGC13350.13393770843115302No Hit
TGGCAATTGAGTGGTG13340.13383738055966898No Hit
TACGTTTACTGCACCG13280.13323541333076494No Hit
ATTTCTGACGGGTAGT13100.13142951164405275No Hit
ATGTACGTGTACTTTC12980.13022557718624467No Hit
TGAGGGATGTACGTTG12820.1286203312425005No Hit
TGAACTGTGAACGTAA12700.12741639678469238No Hit
CGAGTCTCTGCTACGC12640.1268144295557883No Hit
AGAGTACCTTAATCGC12540.1258111508409482No Hit
TCTATGGGATGCTCAA12320.12360393766830001No Hit
TCCATTTGAAATCTGC12270.12310229831087995No Hit
TTCTTAGACGTCCCGA12020.12059410152377972No Hit
CTACAACGAATCTGTG11940.11979147855190764No Hit
GCAACTTGAAGGTGCA11900.1193901670659716No Hit
TACTGTTTGCTTAAGC11820.11858754409409952No Hit
GGCAACAGAATAGCAA11800.1183868883511315No Hit
GGTCTAAACTCCTACC11500.11537705220661121No Hit
TTGCGGTCTTTTGGGT11380.11417311774880308No Hit
CTCAATTTGGAATCTC11250.11286885541951096No Hit
CACCAGGTGCGCCACA11060.11096262586131476No Hit
AGCCAATTGTTATGGC11020.11056131437537874No Hit
CTTTCGTCTCGAACGA11020.11056131437537874No Hit
CGAGTCTCTTGGAACG10970.1100596750179587No Hit
CTAGCTCACGAATAGT10900.10935737991757061No Hit
TCCGGGTGAACACCTA10890.10925705204608661No Hit
CACATTACTGATGGAC10840.10875541268866656No Hit
ATGTCCAGACCGCTAG10830.10865508481718254No Hit
ACCTCAGCTAATCCGT10740.10775213397382645No Hit
ACCAAGTTGAAGCTAA10720.10755147823085845No Hit
CATTCTATGCCTAGCG10590.10624721590156631No Hit
GGGATGTGACTGGAAG10530.10564524867266226No Hit
TGCGCAGACATCAGGG10500.10534426505821022No Hit
AGACTACTGGCCCTAG10410.10444131421485416No Hit
TCGGACCGATAGGCGA10360.10393967485743409No Hit
CATAGTCGAAGATTCC10330.10363869124298207No Hit
GAGTGTTACACCTGCG10320.10353836337149806No Hit
TGTAAGCACGCGCTGT10310.10343803550001406No Hit
CTAACAGTGCATGATC10240.10273574039962599No Hit
GGGTGTGCTCGCAAAG10190.10223410104220593No Hit
TGCTAGTGAAGGCGTA10150.1018327895562699No Hit
TCATCATTGGACTCGC10140.10173246168478588No Hit
TCGTTGCTGTATTGCG10130.10163213381330187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)