FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004948020

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948020
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3464663
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG335958996.96726636905234No Hit
CTATTTGA246710.7120750272104386No Hit
CGATTTGG85590.24703701341227124No Hit
CTTTTTGG82260.23742568902083697No Hit
CTAATTGG60760.17537059159866342No Hit
CTATATGG60500.17462015786239526No Hit
CTAGTTGG57140.16492224496293004No Hit
CTATTTGC56790.16391204570256904No Hit
CTATTTTG55350.15975579731708395No Hit
GTATTTGG53770.15519546922745445No Hit
CAATTTGG53120.15331938488678407No Hit
CTATTTCG45540.1314413551909666No Hit
CTATTAGG42500.1226670530438314No Hit
ATATTTGG40910.11807786211819157No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)