FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004948021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences996732
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGTACT97243997.56273501803895No Hit
ATCGTACA46190.463414438384641No Hit
ATCGAACT30800.30900984417075006No Hit
AACGTACT20880.20948459565861233No Hit
ATAGTACT20750.20818033332932023No Hit
ATCGTAAT16750.16804918473571634No Hit
ATCCTACT15170.15219738104124278No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)