FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948023

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948023
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3740498
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGCCGACCAGGGAT655401.7521731063617731No Hit
GAAGCAGTGGAACCTT238940.6387919469546568No Hit
GTTCTTCCTAACGTAA189650.5070180494682793No Hit
GATACGTACCGCTCGA163550.4372412443476778No Hit
TGTCCCATGAGACAAT153020.4090899126266075No Hit
CGCTTAAGATAATAGG152150.4067640191225875No Hit
CATGGAGGATCGACAT149400.3994120568972367No Hit
AAAGCATGATCTTTGT138670.37072603701432266No Hit
TGAGCGCACAGGACAC134270.35896289745376153No Hit
TGTCGAAACTTCGCAA126060.33701394841007803No Hit
TAATTGCCTGTCTGGC125380.3351960086598095No Hit
GGAAGGACTAGGTAAT112620.301082903934182No Hit
GGGGGGGGGGGGGGGG105850.2829837096557731No Hit
AATGATGGAAAGCTAA99650.2664083766386187No Hit
CATGTCAGAGGTTTGT97920.2617833240386708No Hit
TCGACCTTGTTTCGCC94440.2524797500225906No Hit
GTGAGATCTCGATTAC78040.20863532075140798No Hit
ATGGGTACTTGGCTGC77790.20796696054910338No Hit
AAACGACCTAGGGAGG73940.1976742134336123No Hit
AGCCTACCTTAACTCG70500.18847757704990084No Hit
TTGCGATGACATTCAG69860.18676657493200102No Hit
CAGCTCACTGTTTACG69000.18446741583607315No Hit
TGTTCCTCTTTATGGC68230.18240886641297496No Hit
GCTATGATGACCTGCG67950.1816603029863938No Hit
CCTGTTGACCCTAGTA63060.16858717742931556No Hit
CTGCCTTGACCATAAC62320.16660883123049391No Hit
CAATGTGACCAACGCC61480.1643631409507504No Hit
CATGCAAACGAAGGCT61450.16428293772647384No Hit
AGCTTGTGACTCACTC59980.16035297973692272No Hit
TAACCAGACATCACAC59800.1598717603912634No Hit
ATGCCGCGATGCCACG58830.1572785228063215No Hit
ATGGGTACTTTCGGGC58730.15701117872539966No Hit
CACAGCTCTGGACTGA58690.15690424109303092No Hit
CATGATGTGTCATGTG58490.15636955293118726No Hit
TGGGCCATGCGTTCTC57280.1531346895520329No Hit
CTATTCAACCGAACGA56940.15222571967689866No Hit
ATTAGCGTGGTCGGTC56040.14981962294860202No Hit
AGAACGCGAGGAATAT56020.14976615413241767No Hit
TTGTTTGTGATACGCT54630.146050071407604No Hit
CATTAGTCTATTCTGG54330.1452480391648385No Hit
CCGCTATTGTTCGCAA53610.1433231617822012No Hit
GGGTCGTACCGCTCGA52940.14153195644002484No Hit
CACTATACTACGCCAC51590.13792281134757992No Hit
GGGCTGACTAATACAG50930.13615834041349575No Hit
AGCTCGGACCTTAAGC50370.13466121356033342No Hit
CCCAATGCTGGAATGC50220.13426019743895065No Hit
GGTAGCCTGTGCCACG49970.13359183723664603No Hit
ATAGGAAACAGACTTC49940.13351163401236948No Hit
AACCAACACCGGAATG49650.13273633617769612No Hit
AACGTCCCTTACAGAA49270.1317204286701931No Hit
CTGCCATTGCACAGTT49170.13145308458927127No Hit
TTGACGTGACCTCAAA48560.12982228569564802No Hit
ATAGCCAACATGGCCC48150.12872617496386846No Hit
TGGAGTTACAAGTCTC47370.12664089113267807No Hit
TTGTAACCTCATCCTC47270.1263735470517562No Hit
CTGATTACTGCTTTGA47220.1262398750112953No Hit
CCTACGGGATGGAACG47140.12602599974655782No Hit
TCAGGCTCTTAAAGCA46110.12327235571306282No Hit
GGCTTGCGAGTACGTT45790.12241685465411291No Hit
CGCTTACTGGCCACGT45520.12169502563562393No Hit
CGATCAAACCGATCGC45380.12132074392233333No Hit
TCCAAAGTGAAGGCCA44940.12014442996627721No Hit
TGTTTGTTGCGCTCGA44900.12003749233390848No Hit
GCAGATACTCGGCTCA44550.11910178805068201No Hit
CGCTGAGTGTTAGCTG44340.11854036548074615No Hit
TGGGTGCACTTCTGAG44120.11795220850271809No Hit
ATCTTACTGCGCACTG44060.11779180205416498No Hit
CATGTTACTAACGTGG43320.11581345585534332No Hit
GCGTCGATGCTTGAAC43320.11581345585534332No Hit
CGCTTCCCTGCGCTGT43250.11562631499869803No Hit
TTCTAACACTACGTTG43120.11527876769349962No Hit
CTCGGATCTTTCTGAG43040.11506489242876217No Hit
GTAAGAAACGACAAAT41360.11057351186927517No Hit
AGTGGTACTCAACGCC41220.11019923015598458No Hit
CCTTCAGTGTAGCTTG41090.10985168285078618No Hit
CCTCCCTTGTTTCGCC40970.10953086995367997No Hit
TACGCCTTGGGTTGAG40830.10915658824038937No Hit
AGCCGGTACGCGCAAA40640.10864863448663788No Hit
CGAGTCTCTTACTTTC40510.10830108718143946No Hit
CTTAGGCCTTATGACC40440.10811394632479418No Hit
AACCACTGAAAACATG40420.10806047750860981No Hit
AACAGCTACTCGAGAG40220.10752578934676613No Hit
ACCTGCTTGCCAAACT40210.10749905493867395No Hit
TACAACCGATTCCATT40000.10693763236873806No Hit
GATACCATGTCTGGAT39930.10675049151209277No Hit
ATTGAGAGATGATCAC39710.10616233453406472No Hit
TATCTCCCTGGAATTA39210.10482561412945549No Hit
GCGACGTTGCTTAGTG39120.10458500445662583No Hit
TGAGATAGACTCATCC39110.10455827004853364No Hit
TTCACGCTGTGGGCAA38960.10415725392715086No Hit
ATCGCAATGTAACTCG38730.10354236254103064No Hit
AGAACAATGAGTCGGA38720.10351562813293845No Hit
TCCGGGATGCGAGTTT38410.10268686148208073No Hit
GTCCTGACTTTACGAC38360.10255318944161981No Hit
ACCTCCATGGAATTGA38240.1022323765445136No Hit
AGGTTACTGGTCCCGA38200.10212543891214484No Hit
GAAAGTAACCCTGCGA38180.10207197009596049No Hit
TGGTCCTTGTTTCTGT37890.10129667226128714No Hit
GGTCAGAGAACCAGTT37790.1010293281803653No Hit
CATGTCAGAACAGGTG37710.10081545291562781No Hit
TTCTATGACCAACGCC37440.10009362389713883No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)