FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3460312
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGAGC335679797.00850674736844No Hit
GGTCGCGC375571.0853645567220527No Hit
GGTCGAGA79730.23041274890819094No Hit
GGTCGACC68530.19804572535655746No Hit
GGACGAGC60860.17588009404932273No Hit
GGTCCAGC58360.16865531200654738No Hit
GGTAGAGC54070.15625758602114492No Hit
CGTCGAGC41470.11984468452555723No Hit
GCTCGAGC38100.11010567833189609No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)