FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948028

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948028
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4670983
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATCCTT449790096.29450588880327No Hit
TCATCCTA408650.8748693797429791No Hit
TCCTCCTT401950.8605255039463857No Hit
TCATACTT113320.24260417989104222No Hit
TAATCCTT112450.2407416169144696No Hit
TCAACCTT100470.21509391063936648No Hit
ACATCCTT96860.2073653447250825No Hit
TCATCCAT94560.2024413276605802No Hit
TCATCATT88680.18985297099133094No Hit
TGATCCTT49850.10672271768062526No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)