FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948046

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948046
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2727073
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG72380.2654127703952186No Hit
GGACACCTGGCTCCTT72290.2650827462264486No Hit
TCGCGGTGAGTCTTGA63210.2317869745327683No Hit
NNNNNNNNNNNNNNNN60590.2221796042863539No Hit
GTTAAGAGAGTACGTT54300.1991145818245423No Hit
CGCTTACTGATCACAC47130.1728226563792022No Hit
TACCAGTGATACGATC45710.16761560838305392No Hit
TTGTGGTGAAAGACAT44200.1620785362181357No Hit
ATCTTACTGGTTTGGT43990.16130847982433913No Hit
ATTCCTAACTGCGTGC42640.15635811729278973No Hit
ATAGATGGAGAGTAAT41740.15305787560509015No Hit
ATATGCCGAGAACAGC40900.14997765002990385No Hit
TGGAACACTTGAGGCA38550.14136035228979937No Hit
CTTTCTGCTCTTGTGA37970.13923352986883739No Hit
GCTATACGACAGGTGA37500.1375100703208165No Hit
CTTGACGCTCAGGGTA37380.13707003809578988No Hit
AGCTCTGCTGGCCTGT35900.13164297398712832No Hit
AGGTAGCGATTGACCA35000.12834273229942872No Hit
ACTGGAACTCTGGAAG33260.12196226503654285No Hit
TGTGACTGACCGTTAA33030.12111886993857518No Hit
AGTTCACGACCAGAGA32270.11833199918007328No Hit
TGTACCCTGCTGAGAG31540.11565513647782805No Hit
GCGGTTCGAAGCAAGC31470.1153984510132292No Hit
ACCCTTTCTAGGTGAC30930.11341830600060945No Hit
TTCCAAACTCCGCTAG30490.1118048545088452No Hit
TCAGTCCACCCAGCAC29380.10773455642734903No Hit
ACATGTGTGTCAATGC29090.10667114521686805No Hit
ACACTCCACCGTACAT28620.10494768566884714No Hit
TCCCAGACTCCTAACA28040.1028208632478852No Hit
CACAGCTCTCTCTGGG27950.10249083907911521No Hit
CAGTGGAGAGATCATC27350.10029067795398217No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)