FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948053

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948053
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4075166
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGATTG399211197.96192351428138No Hit
TTAGATTA122520.30065032933627733No Hit
ATAGATTG91380.22423626424052417No Hit
TTAGAATG83370.2045806232187842No Hit
TTAGATTC70280.1724592323355662No Hit
TTACATTG66760.16382154739217986No Hit
TAAGATTG60870.14936814843861573No Hit
TTAGATTT58820.1443376785142004No Hit
TTAGATAG58010.14235002942211433No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)