FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948059

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948059
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3245840
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA130360.4016217681709512No Hit
GTCGACCGATGCTCAA115640.3562714120227738No Hit
CATTCAACTAGGCATG112020.34511867498089865No Hit
GGGGGGGGGGGGGGGG98700.30408153205333593No Hit
ACTGGGCACTTCTCGC92450.2848261158898775No Hit
TGTAAGCTGTTGTGAC90990.2803280506740936No Hit
NNNNNNNNNNNNNNNN72160.22231533285682598No Hit
GCTTTAGGAACTAGTC70300.21658492100658072No Hit
TAGTTGCGACATAGCT52740.16248490375372784No Hit
CATCAGTGATTCGCAA50380.15521405861040594No Hit
CAGGAGCCTCGTGCAC43740.13475710447834768No Hit
CAGGAGCCTTCCAATG38850.11969166687205778No Hit
TCCTTAAACAGGGAGG36130.11131170975772066No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)