FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948061

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948061
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2727073
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCACCT264184996.874891137861No Hit
GCGCCCCT212960.7809105220138955No Hit
GCGCACCA197630.7246964052667457No Hit
GCGCACAT52230.19152402594283321No Hit
GCGCACCG42720.15665147210947414No Hit
GCGAACCT34370.126032563118039No Hit
GCGCAACT32390.1187720314050999No Hit
CCGCACCT29140.1068544919772958No Hit
GCCCACCT29000.10634112104809809No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)