FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948072

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948072
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3230097
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGCCAC315523397.6822987049615No Hit
TAAGCCCC158580.4909450087721824No Hit
AAAGCCAC89040.27565735641994654No Hit
TAACCCAC86900.26903216838379773No Hit
TAAGCCAA76400.23652540465503047No Hit
TAAACCAC60900.1885392296268502No Hit
TAATCCAC39050.12089420224841545No Hit
TAAGCAAC33390.10337150865747993No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)