FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948080

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948080
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1822681
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT384212.107938800042355No Hit
AAATAGGTGTTGCGTA151610.8317966775316141No Hit
TATCACTACTGGTCCG130480.715868547485819No Hit
ATGGGTTACCATGCGC125170.68673563832618No Hit
GGCTTGCGACGACATT90270.49525945571386326No Hit
GTGTTGTGAGGGTAGT85800.4707351423534891No Hit
CTAATCTTGCCACTTC82800.4542758716418287No Hit
CTGCTTTCTCCACTTC73650.4040750959712643No Hit
AGAGAATTGCCTCCTA69440.3809772527392341No Hit
AGCCGAGCTGCCCTTT53840.29538904503859975No Hit
CTGGCCAGAGGAATGC53220.29198746242485657No Hit
AATGGTGCTTCGTACA49730.27283984416362494No Hit
GGGGGGGGGGGGGGGG44650.24496881242521318No Hit
GCTCCTAACCTATCTT43440.23833023990484348No Hit
TCCCTGTGACCCGCAA41950.23015546878471876No Hit
GAGAGAAGACTCACGG40680.22318771085011582No Hit
GCTGTTCTGATAGGTA36490.20019959608949672No Hit
TGCCGTTACAATCTGC35660.19564586452593735No Hit
CTTAATCTGGGAATTA34990.1919699607336665No Hit
TTGTCAACTAATACAG34260.18796487152716246No Hit
GTAATCGTGATCCTCC33670.1847278816205359No Hit
TCTTTCCACCGAGTGA33090.1815457559496149No Hit
TCGTATACTTTCTGGA32890.18044847123550417No Hit
TAGCGCGACAAGACAT30540.1675553758447035No Hit
AGTCCTGCTCCTAGTA29540.16206895227415No Hit
GGGATGTGAAGGTGCA29060.15943546896028432No Hit
GCAAATCTGGAATTGA27470.1507120554831043No Hit
GTTGTTGGATTCCATT26960.147913979462122No Hit
TGCAATGACACCTTGA26600.14593886697672273No Hit
TGTCAATCTGGTGTCC26590.1458840027410172No Hit
TTGCGTCACCACTCAA25470.13973920834199732No Hit
CCTTTCTACTCGGGCT24570.13480142712849916No Hit
TTGTTTGTGGCGCTGT24120.1323325365217501No Hit
GGTTGAACTTCTTTGT23780.13046715250776192No Hit
TACAACCGATCGCTAA23720.1301379670935287No Hit
CAAGTGGGATAGCGAG23700.13002823862211765No Hit
TACGCCTTGCTGATCA23390.12832744731524606No Hit
TAAGGGCGATTTCTTG22170.12163401055917081No Hit
TTCCACTCTCGAATCT21610.11856161335966087No Hit
AATCCAGACTACCAAC21470.11779351405978337No Hit
AGAACGCGAGGAGTCA21170.11614758698861732No Hit
CCCACCTCTCATGATC21070.11559894463156198No Hit
CCTTTCTACTCATTTC21070.11559894463156198No Hit
TCTTTCCACTTCGCAA21060.11554408039585644No Hit
GCTCCTAACGAATAGT21030.11537948768873983No Hit
CTGCCATTGTCTTTGT20630.11318491826051844No Hit
GTGGTAACTTTTCCGC20280.11126467001082471No Hit
GCGACGTTGAGTGGTG19380.10632688879732657No Hit
GAGAGGTTGATGTGGG19320.10599770338309336No Hit
CGGAATTTGAGAGGCT19140.10501014714039375No Hit
CGTTTGCTGGCTAATC18510.10155370029094504No Hit
CTAATCACTGCTCAGC18420.10105992216959522No Hit
ATGTGTGTGCCTTTGC18370.10078560099106755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)