FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948082

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948082
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3193273
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTCGAG313611998.21017495215723No Hit
AGCACGAG53400.16722654154530475No Hit
AGCTCGAA52010.16287364093204684No Hit
AGCTCAAG43810.13719465889700003No Hit
AGCTCGCG43360.13578544646824747No Hit
AGCTCCAG34440.10785172454719656No Hit
AGCTCGAT33700.10553435299769233No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)