FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1792117
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCATTC176147398.29006699897384No Hit
ATGCATTA74050.41319846862676934No Hit
ATGCAATC37390.20863593169419184No Hit
ATGCATAC30120.16806938386277234No Hit
AAGCATTC21560.12030464528822615No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)