FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4061368
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGCCAC395555497.3946217136689No Hit
TAAGCCCC219660.5408522448593676No Hit
AAAGCCAC146180.3599279848563341No Hit
TAACCCAC107160.2638519828786754No Hit
TAAACCAC98350.24215978458489848No Hit
TAAGCCAA95160.23430528826740155No Hit
TAAGCAAC58440.1438924027569036No Hit
TAATCCAC48370.11909780152894295No Hit
GAAGCCAC42690.10511236607960667No Hit
TAAGACAC41340.10178836293583836No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)