FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4787020
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAAGA466283197.40571378435854No Hit
CAGGAAGC312140.6520549318782876No Hit
CAGGAACA120400.2515134676688211No Hit
CAGGAATA98410.20557674712033794No Hit
CACGAAGA95660.1998320458239155No Hit
CAGGATGA85200.17798129107461427No Hit
CAGCAAGA76990.16083074647693138No Hit
CAGGAAAA76660.1601413823213607No Hit
AAGGAAGA63520.1326921550359096No Hit
CAGTAAGA55550.11604296618773266No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)