FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1517006
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT284711.876788885475733No Hit
AAATAGGTGTTGCGTA117530.7747497373115202No Hit
GGCTTGCGACGACATT115560.7617636317852401No Hit
TATCACTACTGGTCCG105750.6970967814234089No Hit
ATGGGTTACCATGCGC101650.6700698612925724No Hit
GTGTTGTGAGGGTAGT67620.4457464242066281No Hit
CTAATCTTGCCACTTC66440.43796794475433853No Hit
CTGCTTTCTCCACTTC59650.39320872824497727No Hit
AGAGAATTGCCTCCTA55390.36512709903586404No Hit
AGCCGAGCTGCCCTTT43480.28661719202165314No Hit
CTGGCCAGAGGAATGC42520.28028893755199386No Hit
GGGGGGGGGGGGGGGG40790.2688848956431286No Hit
AATGGTGCTTCGTACA39890.26295215707782305No Hit
TCCCTGTGACCCGCAA33880.22333464732506003No Hit
GAGAGAAGACTCACGG32030.21113957360748736No Hit
TGCCGTTACAATCTGC29520.19459382494202396No Hit
CTTAATCTGGGAATTA28780.1897157954549949No Hit
TTGTCAACTAATACAG28170.18569471709406557No Hit
GCTGTTCTGATAGGTA27560.1816736387331362No Hit
TCTTTCCACCGAGTGA26720.17613641607218428No Hit
GTAATCGTGATCCTCC26320.1734996433764929No Hit
GGGATGTGAAGGTGCA25920.17086287068080153No Hit
TCGTATACTTTCTGGA25760.16980816160252496No Hit
TAGCGCGACAAGACAT25450.16776466276336416No Hit
GCTCCTAACCTATCTT24260.1599202639936823No Hit
AGTCCTGCTCCTAGTA23360.15398752542837668No Hit
GCAAATCTGGAATTGA22240.14660456188044083No Hit
GTTGTTGGATTCCATT21790.143638192597788No Hit
TGCAATGACACCTTGA21420.1411991778542735No Hit
TTGCGTCACCACTCAA21140.13935343696728952No Hit
TGTCAATCTGGTGTCC21070.13889200174554353No Hit
TACGCCTTGCTGATCA19070.1257081382670866No Hit
TTGTTTGTGGCGCTGT18910.12465342918881006No Hit
TACAACCGATCGCTAA18790.12386239738010264No Hit
CCTTTCTACTCGGGCT18760.1236646394279258No Hit
GGTTGAACTTCTTTGT18730.12346688147574895No Hit
CAAGTGGGATAGCGAG18710.12333504284096437No Hit
AATCCAGACTACCAAC17870.11779782018001246No Hit
CCCACCTCTCATGATC17790.11727046564087419No Hit
GAGGTGCCTTCGTACA17780.1172045463234819No Hit
TTCCACTCTCGAATCT17640.11628167587998993No Hit
TAAGGGCGATTTCTTG17480.11522696680171338No Hit
TCTTTCCACTTCGCAA17240.11364490318429854No Hit
AGAACGCGAGGAGTCA17080.11259019410602199No Hit
CCTTTCTACTCATTTC16810.11081037253643032No Hit
CTGCCATTGTCTTTGT16590.10936014755380005No Hit
GTGGTAACTTTTCCGC16050.10580050441461669No Hit
CGGAATTTGAGAGGCT15360.10125207151454906No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)