FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1578651
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTGACT153478997.22155181860968No Hit
CACTGCCT212721.347479588585444No Hit
CACTGACA55520.3516926793825868No Hit
CACAGACT32660.20688549907484302No Hit
AACTGACT16750.10610324891315434No Hit
CACTCACT16720.10591321324345912No Hit
CACTAACT15970.10116232150107908No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)