FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948113

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948113
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1682663
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT352962.0976273918188015No Hit
AAATAGGTGTTGCGTA140550.8352831196739929No Hit
TATCACTACTGGTCCG120770.717731357972452No Hit
ATGGGTTACCATGCGC117930.7008533497200568No Hit
GGCTTGCGACGACATT79580.47294080870619964No Hit
GTGTTGTGAGGGTAGT79150.47038533562573137No Hit
CTAATCTTGCCACTTC76670.4556467932081468No Hit
CTGCTTTCTCCACTTC69730.4144026462815193No Hit
AGAGAATTGCCTCCTA65620.38997707800076425No Hit
GGGGGGGGGGGGGGGG52960.3147391961432563No Hit
AGCCGAGCTGCCCTTT50910.30255612680614No Hit
CTGGCCAGAGGAATGC49050.2915022199929516No Hit
AATGGTGCTTCGTACA43970.26131197987951243No Hit
GCTCCTAACCTATCTT39230.2331423463878388No Hit
TCCCTGTGACCCGCAA39110.23242919110956858No Hit
GAGAGAAGACTCACGG35250.20948936299187657No Hit
TGCCGTTACAATCTGC33880.2013475068982916No Hit
TTGTCAACTAATACAG33340.19813830814607558No Hit
CTTAATCTGGGAATTA33050.19641484955692257No Hit
TCTTTCCACCGAGTGA31430.18678725330027462No Hit
GCTGTTCTGATAGGTA31270.18583637959591431No Hit
GTAATCGTGATCCTCC31040.18446949864589643No Hit
TAGCGCGACAAGACAT29670.17632764255231143No Hit
AGTCCTGCTCCTAGTA28490.16931494898265428No Hit
TCGTATACTTTCTGGA27900.1658086021978257No Hit
GGGATGTGAAGGTGCA27380.16271826265865477No Hit
TGCAATGACACCTTGA25750.1530312367954843No Hit
GCAAATCTGGAATTGA25000.14857401630629544No Hit
GTTGTTGGATTCCATT24740.14702884653670997No Hit
TTGCGTCACCACTCAA24660.14655340968452982No Hit
CCTTTCTACTCGGGCT23250.13817383516485476No Hit
TACGCCTTGCTGATCA23240.13811440555833224No Hit
TGTCAATCTGGTGTCC22240.13217144490608043No Hit
TACAACCGATCGCTAA21960.13050741592344992No Hit
CAAGTGGGATAGCGAG21870.12997254946474726No Hit
TTGTTTGTGGCGCTGT21690.12890281654734193No Hit
GGTTGAACTTCTTTGT21300.1265850618929637No Hit
CCTTTCTACTCATTTC20580.1223061302233424No Hit
AGAACGCGAGGAGTCA20440.12147411573202715No Hit
TAAGGGCGATTTCTTG20160.11981008674939664No Hit
AATCCAGACTACCAAC20160.11981008674939664No Hit
TTCCACTCTCGAATCT20080.11933464989721648No Hit
CCCACCTCTCATGATC19970.11868092422546879No Hit
CTGCCATTGTCTTTGT19470.11570944389934289No Hit
GCTCCTAACGAATAGT19450.11559058468629785No Hit
GTGGTAACTTTTCCGC19210.11416427412975741No Hit
TCTTTCCACTTCGCAA18900.11232195632755934No Hit
GCGACGTTGAGTGGTG18070.10738929898619035No Hit
CGGAATTTGAGAGGCT17970.10679500292096517No Hit
GAGAGGTTGATGTGGG17110.10168405676002859No Hit
CTAATCACTGCTCAGC16980.10091147187523586No Hit
CGTTTGCTGGCTAATC16960.10079261266219082No Hit
ATGTGTGTGCCTTTGC16870.10025774620348817No Hit
TATTGCTTGTTCGTTT16830.10002002777739809No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)