FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences881119
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA35640.40448565971225225No Hit
GTCGACCGATGCTCAA31900.3620396336930653No Hit
CATTCAACTAGGCATG30050.3410436047798311No Hit
ACTGGGCACTTCTCGC25730.29201503996622474No Hit
TGTAAGCTGTTGTGAC24460.2776015498474099No Hit
GGGGGGGGGGGGGGGG24090.2734023440647631No Hit
GCTTTAGGAACTAGTC21260.24128409442992377No Hit
CATCAGTGATTCGCAA14100.16002378793329844No Hit
TAGTTGCGACATAGCT13970.15854839130696308No Hit
CAGGAGCCTCGTGCAC12130.13766585444190854No Hit
CAGGAGCCTTCCAATG10700.1214364915522194No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)