FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948120

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948120
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5204132
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTTT504101396.86558680679121No Hit
GCACGTTA509860.979721498224872No Hit
GCACGGTT224550.4314840592052622No Hit
GCACGTAT113310.21773083388353714No Hit
GCACGATT93630.1799147292958749No Hit
GCTCGTTT74650.14344370972911524No Hit
CCACGTTT64140.12324821891527733No Hit
GCACCTTT63670.12234509040124271No Hit
GCAGGTTT58250.11193028923939669No Hit
GCACGTGT53930.10362919311039766No Hit
GCCCGTTT53840.10345625360771019No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)