FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004948129

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948129
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16130504
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGTGTC1589768398.55664150357609No Hit
CCGGTGTA434420.26931582546955757No Hit
CCGGTGAC203270.12601590130103807RNA PCR Primer, Index 37 (100% over 8bp)
CCGGAGTC189380.11740488703886748No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)