FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948132

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948132
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3885970
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTATG380090697.8109969968888No Hit
CCGTTATA144710.3723909345671737No Hit
ACGTTATG100710.25916309184064723No Hit
CCGGTATG86670.22303311657063743No Hit
CCGATATG68120.1752972874211587No Hit
CCGTTAAG54840.14112306579824344No Hit
CCGTTTTG49780.12810186388469288No Hit
CCGTTATT42690.10985674104535031No Hit
CCGTTATC41170.10594523375116122No Hit
CCCTTATG40410.10398948010406667No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)