FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4839075
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTTGAT474031497.95909342177998No Hit
AAGTTGAA197100.40730924815176456No Hit
AATTTGAT97130.20072017895982186No Hit
AAGTTCAT83520.1725949690798345No Hit
AAGTAGAT80900.1671807111896385No Hit
AAGATGAT77580.1603198958478635No Hit
AACTTGAT76240.15755077158341213No Hit
AAGTTGCT70660.1460196421836818No Hit
AAGTTTAT57810.11946498039398026No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)