FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948140

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948140
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1057520
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTCAACTAGGCATG38920.3680308646644981No Hit
TGGCCGATGGTTAGAA38470.36377562599288904No Hit
GTCGACCGATGCTCAA33070.31271276193358044No Hit
GGGGGGGGGGGGGGGG32340.3058098191996369No Hit
ACTGGGCACTTCTCGC31630.2990959981844315No Hit
TGTAAGCTGTTGTGAC30860.29181481201301157No Hit
GCTTTAGGAACTAGTC22870.21626068537710869No Hit
TAGTTGCGACATAGCT18580.1756940767077691No Hit
CATCAGTGATTCGCAA17260.16321204327104927No Hit
CAGGAGCCTCGTGCAC14920.14108480217868222No Hit
CAGGAGCCTTCCAATG12810.12113246085180421No Hit
TCCTTAAACAGGGAGG12390.11716090475830244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)