FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004948142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1117567
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTAC108920597.4621655793344No Hit
CCGCTTAC39000.34897236586262836No Hit
CAGCTTAA31640.2831150168177836No Hit
CAGCTAAC29320.2623556350536478No Hit
CAGCATAC27110.2425805343214322No Hit
AAGCTTAC27000.24159625328951193No Hit
CACCTTAC22180.1984668480726435No Hit
CAGATTAC19140.1712648995541207No Hit
CATCTTAC13950.12482473086624785No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)