FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004948154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15594974
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCCTGA1527604497.95491803961968No Hit
TATCCTCA770740.49422333118349543No Hit
TATCCTAA413330.26504051882356455No Hit
AATCCTGA333110.21360086910051918No Hit
TATCCTGC265210.1700612004867722No Hit
TAACCTGA234040.15007399178735406No Hit
TATCCAGA172170.1104009535379796No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)