FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004948158

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948158
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14676424
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGTTACA1444288998.40877450801366No Hit
ACGTTAAA330000.22485041315241366No Hit
ACGATACA270460.18428194770061154No Hit
ACATTACA223050.15197843834438143No Hit
ACGTAACA183450.12499638876609179No Hit
ACGGTACA175490.11957272425490023No Hit
ACCTTACA169630.11557992600922404No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)