FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6090313
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTTT593381097.4302962754131No Hit
GCACGTTA615451.0105391956045608No Hit
GCACGTAT122070.20043304835071696No Hit
GCCCGTTT118960.19532657845335702No Hit
GCACGATT108940.1788742220637921No Hit
GCACGGTT106780.1753276063151434No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)