FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3832801
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTATG374795397.78626649283383No Hit
CCGTTATA146010.38094855433402364No Hit
ACGTTATG98530.25707048187474385No Hit
CCGATATG75870.19794922825369748No Hit
CCGGTATG74060.19322683332633236No Hit
CCGTTAAG60570.15803064129862207No Hit
CCGTTTTG47760.12460860869113737No Hit
CCGTTATC43460.11338965941618154No Hit
CCGTAATG42950.11205903985101237No Hit
CCCTTATG41720.1088498985467808No Hit
CCGTTATT40790.10642347463382523No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)