FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004948186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences892551
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGCGA86061396.42171707835182No Hit
TCCTGCGA87380.9789916766660953No Hit
TCATGCGC36560.4096124479161415No Hit
TCATGCAA24660.27628673319507796No Hit
TCAAGCGA21380.23953813283498646No Hit
ACATGCGA19000.21287298989077375No Hit
TCATGCCA17250.19326626713767617No Hit
TCATCCGA15920.178365157845322No Hit
TAATGCGA14430.16167143390125607No Hit
TCATGAGA13890.1556213594517288No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)