FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4022270
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGGTAAA394777598.14793636429181No Hit
TAGGAAAA129580.32215639427487464No Hit
AAGGTAAA119840.2979412123005169No Hit
TAGCTAAA84010.20886215992461965No Hit
TACGTAAA68230.16963058173618378No Hit
TATGTAAA57390.14268062561687803No Hit
TAGTTAAA41560.10332473951276269No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)