FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences892551
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA45720.5122396367266409No Hit
CGACCAGACGCGCTGT41900.4694409619170221No Hit
TAGCTTTACCCTATCC40180.4501703544111205No Hit
CCAGGACTGTAACTCG31270.3503441259939208No Hit
ATCTGTACTGGGACTA29430.3297290574992353No Hit
CTTCCTTTGGCTCAGC27840.31191494939784953No Hit
GTTCTCGACCGTAGAG27810.31157883415065357No Hit
CGATCAAACCCGGCTA26770.299926838914527No Hit
GATGAATGACTCCTAC26180.29331657238633985No Hit
AGACCATTGAATCCAC24690.27662284844227386No Hit
GGCAACAGAATAGCAA23550.2638504690488275No Hit
GGGGGGGGGGGGGGGG23250.26048931657686786No Hit
TGCTGCTACTTTCTTG22620.2534308963857528No Hit
ACAGCCGACTTGCGTA20170.22598148453141614No Hit
AACTTACCTCACCTAA18970.21253687464357782No Hit
ATCGAAAGATTTCCGC17910.20066080257598726No Hit
CCCTGAACTAGCTTTG17780.19920430317147145No Hit
GTAACTGTGTGAAAGT17410.19505888178938793No Hit
CGCGTTGGAGCGGTTC17080.19136161407023242No Hit
AGTGGAGTGAGTTGAA16340.18307077130606542No Hit
CAATTCGGATAACGGG15850.1775808889351981No Hit
CGCGATCGATATCTGG14760.1653687016204116No Hit
TTCCTAAACTAATGCC14520.16267977964284394No Hit
GGGTAGAACCAGTCTA14410.1614473570697921No Hit
AAGAACCCTTAACCCA14020.15707785885624462No Hit
TTTAGTCTGAGCAATA13800.15461301371014094No Hit
TCCGGGAACGTTCTCC13560.15192409173257326No Hit
TGGAACACTCCTAGTA13040.14609809411450997No Hit
GTGAAGCGATCCCAGG12900.14452955629426217No Hit
TGATAGAGAGACTGTT12720.14251286481108644No Hit
CTTTAACTGTCCGTAA12610.14128044223803457No Hit
TGCAGATACTGCCACG12540.14049617332791067No Hit
GCAACTTGAAGGTGCA12460.1395998660020548No Hit
TGCAGTATGACACCGC12280.13758317451887903No Hit
AGTCCTGCTCGAACGA12260.13735909768741505No Hit
CTATTGGGACTTGTGA12260.13735909768741505No Hit
AGGTGTGGATCATGTG12150.13612667511436322No Hit
TCTCAGAGATGCATGT12090.13545444461997128No Hit
CATAGGTACAAGGTGC11970.13410998363118748No Hit
CACATCCTGAGCCTAT11720.13130902323788782No Hit
CTTAGATCTTGTCACA11600.12996456224910397No Hit
ATTTCTGACGGGTAGT11570.129628447001908No Hit
TCAAAGCACTCTGCAA11470.12850806284458816No Hit
TACGTTTACTGCACCG11440.1281719475973922No Hit
GAGTGTTACACCTGCG11370.12738767868726827No Hit
ATGTACGTGTACTTTC11100.12436264146250466No Hit
GGTCTAAACTCCTACC11080.12413856463104068No Hit
GGGTGTGCTCGCAAAG10880.12189779631640096No Hit
TGAACTGTGAACGTAA10870.12178575790066898No Hit
TGGCAATTGAGTGGTG10740.12032925849615315No Hit
TGAGGGATGTACGTTG10730.12021722008042118No Hit
GGTCGCATGGTACTAC10670.11954498958602926No Hit
TCTATGGGATGCTCAA10650.11932091275456529No Hit
AGAGTACCTTAATCGC10510.11775237493431748No Hit
TCCATTTGAAATCTGC10430.1168560676084616No Hit
TTCTTAGACGTCCCGA10120.11338287672077003No Hit
GGGATGTGACTGGAAG10100.11315879988930604No Hit
CGAGTCTCTGCTACGC10000.11203841573198618No Hit
TTGCGGTCTTTTGGGT9900.11091803157466631No Hit
CATTCTATGCCTAGCG9820.11002172424881043No Hit
GTAATCTCTACACAAA9800.10979764741734646No Hit
CTACAACGAATCTGTG9780.10957357058588249No Hit
GCATGATACTTGCGTA9770.1094615321701505No Hit
AGACTACTGGCCCTAG9630.1078929943499027No Hit
TACTGTTTGCTTAAGC9610.10766891751843873No Hit
CACCAGGTGCGCCACA9460.10598834128245893No Hit
CTAGCTCACGAATAGT9410.105428149203799No Hit
CTTTCGTCTCGAACGA9370.10497999554087106No Hit
TGCTAGTGAAGGCGTA9340.10464388029367509No Hit
GGGCCTTGACTATCTT9300.10419572663074715No Hit
ACCAAGTTGAAGCTAA9290.10408368821501517No Hit
CGAGTCTCTTGGAACG9280.10397164979928318No Hit
TAGTACCGAACGAGCA9260.10374757296781921No Hit
TCGGACCGATAGGCGA9220.10329941930489125No Hit
ACGAGGATGAACTAGA9200.10307534247342728No Hit
TCCGGGTGAACACCTA9160.10262718881049934No Hit
TGCGCAGACATCAGGG9140.10240311197903537No Hit
CATAGTCGAAGATTCC9140.10240311197903537No Hit
AGGCGATGACCTGCGA9050.1013947662374475No Hit
ATGTCCAGACCGCTAG9030.10117068940598353No Hit
GGCTGACTGAAACTGA8940.10016234366439565No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)