FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3266250
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA126730.38799846919249903No Hit
CATTCAACTAGGCATG116630.35707615767317263No Hit
GTCGACCGATGCTCAA115760.35441255262150784No Hit
GGGGGGGGGGGGGGGG107410.32884806735553No Hit
ACTGGGCACTTCTCGC94190.28837351703023345No Hit
NNNNNNNNNNNNNNNN93160.2852200535782625No Hit
TGTAAGCTGTTGTGAC90990.2785763490241102No Hit
GCTTTAGGAACTAGTC77910.23853042479908154No Hit
TAGTTGCGACATAGCT56120.17181783390738614No Hit
CATCAGTGATTCGCAA52580.16097971680061232No Hit
CAGGAGCCTCGTGCAC44750.13700727133562954No Hit
CAGGAGCCTTCCAATG39220.12007654037504785No Hit
TCCTTAAACAGGGAGG35660.10917719096823575No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)